I have read the KB articles on backing up PRTG and it is a bit unclear if you have to stop PRTG to back up the Monitoring Database folder. Does PRTG have to be stopped to back this folder up?
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Disclaimer: The information in the Paessler Knowledge Base comes without warranty of any kind. Use at your own risk. Before applying any instructions please exercise proper system administrator housekeeping. You must make sure that a proper backup of all your data is available.